Sicegar Figures Samples: SCV096, SCV097, SCV098, SCV099
Mehmet Umut Caglar
16 August, 2017
Here is the association table of sample names and conditions, colored with respect to condition color used in figures.
| File.names | Conditions |
|---|---|
| SCV096 | EGFP |
| SCV097 | mCherry |
| SCV098 | EGFP+mCherry_EGFP_Sig |
| SCV099 | EGFP+mCherry_mCherry_Sig |
The Aim of Distriburion Analysis
This part of document includes figures representing the distribution of labels associated with samples. Can give idea about percentage distributions of classes (like: “no signal”, “infection”, “infection&lysis”) and distribution of problematic samples (like: “dirt”, “dried out”, “multiple infections”)
Distibutions
Here once more the figures side by side
Distribution of DDOM
The Aim of Single Variable Analysis
This part of document includes single variable figures associated with samples. We focus on 5 parameters: maximum, shape, midpoint, infection time, start point. For all parameters we investigate either the entire set of infections (i.e both “infection” and “infection & lysis”), or we only investigate the “infection & lysis” cases.
For each figure we include tables showing p-values from t.test, Mann-Whitney U Test (wilcox.test), ,ean differences between conditions and the effect size. The tables also show the sample size for each condition.
Maximum
ttest. adjusted p values
Maximum Distribution (inf + infLys)
| EGFP | mCherry | EGFP+mCherry_EGFP_Sig | EGFP+mCherry_mCherry_Sig | numSamples | |
|---|---|---|---|---|---|
| EGFP | 1.00000 | 0.00000 | 0.00930 | 1.00000 | 308 |
| mCherry | 0.00000 | 1.00000 | 0.00000 | 0.00000 | 268 |
| EGFP+mCherry_EGFP_Sig | 0.00930 | 0.00000 | 1.00000 | 0.00080 | 476 |
| EGFP+mCherry_mCherry_Sig | 1.00000 | 0.00000 | 0.00080 | 1.00000 | 364 |
| numSamples | 308 | 268 | 476 | 364 |
Mann-Whitney U Test, adjusted p values
Maximum Distribution (inf + infLys)
| EGFP | mCherry | EGFP+mCherry_EGFP_Sig | EGFP+mCherry_mCherry_Sig | numSamples | |
|---|---|---|---|---|---|
| EGFP | 1.00000 | 0.00000 | 0.03602 | 0.58780 | 308 |
| mCherry | 0.00000 | 1.00000 | 0.00000 | 0.00000 | 268 |
| EGFP+mCherry_EGFP_Sig | 0.03602 | 0.00000 | 1.00000 | 0.00150 | 476 |
| EGFP+mCherry_mCherry_Sig | 0.58780 | 0.00000 | 0.00150 | 1.00000 | 364 |
| numSamples | 308 | 268 | 476 | 364 |
Diffrence between means
Maximum Distribution (inf + infLys)
| EGFP | mCherry | EGFP+mCherry_EGFP_Sig | EGFP+mCherry_mCherry_Sig | numSamples | |
|---|---|---|---|---|---|
| EGFP | 0.00000 | 0.64865 | 0.27339 | 0.03281 | 308 |
| mCherry | 0.64865 | 0.00000 | 0.92204 | 0.61584 | 268 |
| EGFP+mCherry_EGFP_Sig | 0.27339 | 0.92204 | 0.00000 | 0.30620 | 476 |
| EGFP+mCherry_mCherry_Sig | 0.03281 | 0.61584 | 0.30620 | 0.00000 | 364 |
| numSamples | 308 | 268 | 476 | 364 |
effect size needed for Power = 0.95 and sig.level = 0.05
Maximum Distribution (inf + infLys)
| EGFP | mCherry | EGFP+mCherry_EGFP_Sig | EGFP+mCherry_mCherry_Sig | numSamples | |
|---|---|---|---|---|---|
| EGFP | 4.176e-01 | 4.599e-01 | 3.380e-01 | 3.820e-01 | 308 |
| mCherry | 4.599e-01 | 5.020e-01 | 3.805e-01 | 4.245e-01 | 268 |
| EGFP+mCherry_EGFP_Sig | 3.380e-01 | 3.805e-01 | 2.584e-01 | 3.025e-01 | 476 |
| EGFP+mCherry_mCherry_Sig | 3.820e-01 | 4.245e-01 | 3.025e-01 | 3.465e-01 | 364 |
| numSamples | 308 | 268 | 476 | 364 |
ttest. adjusted p values
Maximum Distribution (infLys)
| EGFP | mCherry | EGFP+mCherry_EGFP_Sig | EGFP+mCherry_mCherry_Sig | numSamples | |
|---|---|---|---|---|---|
| EGFP | 1.00000 | 0.00000 | 0.12122 | 1.00000 | 270 |
| mCherry | 0.00000 | 1.00000 | 0.00000 | 0.00000 | 161 |
| EGFP+mCherry_EGFP_Sig | 0.12122 | 0.00000 | 1.00000 | 0.04795 | 358 |
| EGFP+mCherry_mCherry_Sig | 1.00000 | 0.00000 | 0.04795 | 1.00000 | 245 |
| numSamples | 270 | 161 | 358 | 245 |
Mann-Whitney U Test, adjusted p values
Maximum Distribution (infLys)
| EGFP | mCherry | EGFP+mCherry_EGFP_Sig | EGFP+mCherry_mCherry_Sig | numSamples | |
|---|---|---|---|---|---|
| EGFP | 1.00000 | 0.00000 | 0.27254 | 0.61955 | 270 |
| mCherry | 0.00000 | 1.00000 | 0.00000 | 0.00000 | 161 |
| EGFP+mCherry_EGFP_Sig | 0.27254 | 0.00000 | 1.00000 | 0.05355 | 358 |
| EGFP+mCherry_mCherry_Sig | 0.61955 | 0.00000 | 0.05355 | 1.00000 | 245 |
| numSamples | 270 | 161 | 358 | 245 |
Diffrence between means
Maximum Distribution (infLys)
| EGFP | mCherry | EGFP+mCherry_EGFP_Sig | EGFP+mCherry_mCherry_Sig | numSamples | |
|---|---|---|---|---|---|
| EGFP | 0.00000 | 0.95878 | 0.20117 | 0.03984 | 270 |
| mCherry | 0.95878 | 0.00000 | 1.15995 | 0.91894 | 161 |
| EGFP+mCherry_EGFP_Sig | 0.20117 | 1.15995 | 0.00000 | 0.24101 | 358 |
| EGFP+mCherry_mCherry_Sig | 0.03984 | 0.91894 | 0.24101 | 0.00000 | 245 |
| numSamples | 270 | 161 | 358 | 245 |
effect size needed for Power = 0.95 and sig.level = 0.05
Maximum Distribution (infLys)
| EGFP | mCherry | EGFP+mCherry_EGFP_Sig | EGFP+mCherry_mCherry_Sig | numSamples | |
|---|---|---|---|---|---|
| EGFP | 4.462e-01 | 5.872e-01 | 3.809e-01 | 4.337e-01 | 270 |
| mCherry | 5.872e-01 | 7.285e-01 | 5.216e-01 | 5.745e-01 | 161 |
| EGFP+mCherry_EGFP_Sig | 3.809e-01 | 5.216e-01 | 3.152e-01 | 3.672e-01 | 358 |
| EGFP+mCherry_mCherry_Sig | 4.337e-01 | 5.745e-01 | 3.672e-01 | 4.184e-01 | 245 |
| numSamples | 270 | 161 | 358 | 245 |
ttest. adjusted p values
Maximum Distribution (inf)
| EGFP | mCherry | EGFP+mCherry_EGFP_Sig | EGFP+mCherry_mCherry_Sig | numSamples | |
|---|---|---|---|---|---|
| EGFP | 1.00000 | 0.31597 | 0.47338 | 0.60120 | 38 |
| mCherry | 0.31597 | 1.00000 | 0.00000 | 0.47338 | 107 |
| EGFP+mCherry_EGFP_Sig | 0.47338 | 0.00000 | 1.00000 | 0.00060 | 118 |
| EGFP+mCherry_mCherry_Sig | 0.60120 | 0.47338 | 0.00060 | 1.00000 | 119 |
| numSamples | 38 | 107 | 118 | 119 |
Mann-Whitney U Test, adjusted p values
Maximum Distribution (inf)
| EGFP | mCherry | EGFP+mCherry_EGFP_Sig | EGFP+mCherry_mCherry_Sig | numSamples | |
|---|---|---|---|---|---|
| EGFP | 1.00000 | 0.00420 | 1.00000 | 0.23782 | 38 |
| mCherry | 0.00420 | 1.00000 | 0.00000 | 0.06087 | 107 |
| EGFP+mCherry_EGFP_Sig | 1.00000 | 0.00000 | 1.00000 | 0.00315 | 118 |
| EGFP+mCherry_mCherry_Sig | 0.23782 | 0.06087 | 0.00315 | 1.00000 | 119 |
| numSamples | 38 | 107 | 118 | 119 |
Diffrence between means
Maximum Distribution (inf)
| EGFP | mCherry | EGFP+mCherry_EGFP_Sig | EGFP+mCherry_mCherry_Sig | numSamples | |
|---|---|---|---|---|---|
| EGFP | 0.00000 | 0.42643 | 0.31482 | 0.23858 | 38 |
| mCherry | 0.42643 | 0.00000 | 0.74125 | 0.18785 | 107 |
| EGFP+mCherry_EGFP_Sig | 0.31482 | 0.74125 | 0.00000 | 0.55340 | 118 |
| EGFP+mCherry_mCherry_Sig | 0.23858 | 0.18785 | 0.55340 | 0.00000 | 119 |
| numSamples | 38 | 107 | 118 | 119 |
effect size needed for Power = 0.95 and sig.level = 0.05
Maximum Distribution (inf)
| EGFP | mCherry | EGFP+mCherry_EGFP_Sig | EGFP+mCherry_mCherry_Sig | numSamples | |
|---|---|---|---|---|---|
| EGFP | 1.183e+00 | 8.539e-01 | 7.741e-01 | 9.239e-01 | 38 |
| mCherry | 8.539e-01 | 5.222e-01 | 4.507e-01 | 5.766e-01 | 107 |
| EGFP+mCherry_EGFP_Sig | 7.741e-01 | 4.507e-01 | 3.729e-01 | 5.121e-01 | 118 |
| EGFP+mCherry_mCherry_Sig | 9.239e-01 | 5.766e-01 | 5.121e-01 | 6.199e-01 | 119 |
| numSamples | 38 | 107 | 118 | 119 |
Here are the figures side by side
Following is the violin graph representing the distribution of maximums
Slope
ttest. adjusted p values
Slope Distribution (inf + infLys)
| EGFP | mCherry | EGFP+mCherry_EGFP_Sig | EGFP+mCherry_mCherry_Sig | numSamples | |
|---|---|---|---|---|---|
| EGFP | 1.00000 | 0.00005 | 0.56955 | 0.56955 | 308 |
| mCherry | 0.00005 | 1.00000 | 0.00000 | 0.00063 | 268 |
| EGFP+mCherry_EGFP_Sig | 0.56955 | 0.00000 | 1.00000 | 0.06907 | 476 |
| EGFP+mCherry_mCherry_Sig | 0.56955 | 0.00063 | 0.06907 | 1.00000 | 364 |
| numSamples | 308 | 268 | 476 | 364 |
Mann-Whitney U Test, adjusted p values
Slope Distribution (inf + infLys)
| EGFP | mCherry | EGFP+mCherry_EGFP_Sig | EGFP+mCherry_mCherry_Sig | numSamples | |
|---|---|---|---|---|---|
| EGFP | 1.00000 | 0.00000 | 1.00000 | 0.14222 | 308 |
| mCherry | 0.00000 | 1.00000 | 0.00000 | 0.00050 | 268 |
| EGFP+mCherry_EGFP_Sig | 1.00000 | 0.00000 | 1.00000 | 0.06548 | 476 |
| EGFP+mCherry_mCherry_Sig | 0.14222 | 0.00050 | 0.06548 | 1.00000 | 364 |
| numSamples | 308 | 268 | 476 | 364 |
Diffrence between means
Slope Distribution (inf + infLys)
| EGFP | mCherry | EGFP+mCherry_EGFP_Sig | EGFP+mCherry_mCherry_Sig | numSamples | |
|---|---|---|---|---|---|
| EGFP | 0.00000 | 0.26830 | 0.04440 | 0.05098 | 308 |
| mCherry | 0.26830 | 0.00000 | 0.31270 | 0.21732 | 268 |
| EGFP+mCherry_EGFP_Sig | 0.04440 | 0.31270 | 0.00000 | 0.09539 | 476 |
| EGFP+mCherry_mCherry_Sig | 0.05098 | 0.21732 | 0.09539 | 0.00000 | 364 |
| numSamples | 308 | 268 | 476 | 364 |
effect size needed for Power = 0.95 and sig.level = 0.05
Slope Distribution (inf + infLys)
| EGFP | mCherry | EGFP+mCherry_EGFP_Sig | EGFP+mCherry_mCherry_Sig | numSamples | |
|---|---|---|---|---|---|
| EGFP | 1.955e-01 | 2.169e-01 | 1.659e-01 | 1.845e-01 | 308 |
| mCherry | 2.169e-01 | 2.382e-01 | 1.872e-01 | 2.059e-01 | 268 |
| EGFP+mCherry_EGFP_Sig | 1.659e-01 | 1.872e-01 | 1.362e-01 | 1.549e-01 | 476 |
| EGFP+mCherry_mCherry_Sig | 1.845e-01 | 2.059e-01 | 1.549e-01 | 1.736e-01 | 364 |
| numSamples | 308 | 268 | 476 | 364 |
ttest. adjusted p values
Slope Distribution (infLys)
| EGFP | mCherry | EGFP+mCherry_EGFP_Sig | EGFP+mCherry_mCherry_Sig | numSamples | |
|---|---|---|---|---|---|
| EGFP | 1.00000 | 0.00000 | 1.00000 | 0.22814 | 270 |
| mCherry | 0.00000 | 1.00000 | 0.00000 | 0.00230 | 161 |
| EGFP+mCherry_EGFP_Sig | 1.00000 | 0.00000 | 1.00000 | 0.07650 | 358 |
| EGFP+mCherry_mCherry_Sig | 0.22814 | 0.00230 | 0.07650 | 1.00000 | 245 |
| numSamples | 270 | 161 | 358 | 245 |
Mann-Whitney U Test, adjusted p values
Slope Distribution (infLys)
| EGFP | mCherry | EGFP+mCherry_EGFP_Sig | EGFP+mCherry_mCherry_Sig | numSamples | |
|---|---|---|---|---|---|
| EGFP | 1.00000 | 0.00000 | 1.00000 | 0.03804 | 270 |
| mCherry | 0.00000 | 1.00000 | 0.00000 | 0.00477 | 161 |
| EGFP+mCherry_EGFP_Sig | 1.00000 | 0.00000 | 1.00000 | 0.03804 | 358 |
| EGFP+mCherry_mCherry_Sig | 0.03804 | 0.00477 | 0.03804 | 1.00000 | 245 |
| numSamples | 270 | 161 | 358 | 245 |
Diffrence between means
Slope Distribution (infLys)
| EGFP | mCherry | EGFP+mCherry_EGFP_Sig | EGFP+mCherry_mCherry_Sig | numSamples | |
|---|---|---|---|---|---|
| EGFP | 0.00000 | 0.35831 | 0.02204 | 0.09288 | 270 |
| mCherry | 0.35831 | 0.00000 | 0.38036 | 0.26543 | 161 |
| EGFP+mCherry_EGFP_Sig | 0.02204 | 0.38036 | 0.00000 | 0.11493 | 358 |
| EGFP+mCherry_mCherry_Sig | 0.09288 | 0.26543 | 0.11493 | 0.00000 | 245 |
| numSamples | 270 | 161 | 358 | 245 |
effect size needed for Power = 0.95 and sig.level = 0.05
Slope Distribution (infLys)
| EGFP | mCherry | EGFP+mCherry_EGFP_Sig | EGFP+mCherry_mCherry_Sig | numSamples | |
|---|---|---|---|---|---|
| EGFP | 2.068e-01 | 2.689e-01 | 1.844e-01 | 2.119e-01 | 270 |
| mCherry | 2.689e-01 | 3.310e-01 | 2.465e-01 | 2.739e-01 | 161 |
| EGFP+mCherry_EGFP_Sig | 1.844e-01 | 2.465e-01 | 1.619e-01 | 1.896e-01 | 358 |
| EGFP+mCherry_mCherry_Sig | 2.119e-01 | 2.739e-01 | 1.896e-01 | 2.169e-01 | 245 |
| numSamples | 270 | 161 | 358 | 245 |
ttest. adjusted p values
Slope Distribution (inf)
| EGFP | mCherry | EGFP+mCherry_EGFP_Sig | EGFP+mCherry_mCherry_Sig | numSamples | |
|---|---|---|---|---|---|
| EGFP | 1.00000 | 0.70190 | 0.84970 | 1.00000 | 38 |
| mCherry | 0.70190 | 1.00000 | 0.01810 | 0.21965 | 107 |
| EGFP+mCherry_EGFP_Sig | 0.84970 | 0.01810 | 1.00000 | 0.70190 | 118 |
| EGFP+mCherry_mCherry_Sig | 1.00000 | 0.21965 | 0.70190 | 1.00000 | 119 |
| numSamples | 38 | 107 | 118 | 119 |
Mann-Whitney U Test, adjusted p values
Slope Distribution (inf)
| EGFP | mCherry | EGFP+mCherry_EGFP_Sig | EGFP+mCherry_mCherry_Sig | numSamples | |
|---|---|---|---|---|---|
| EGFP | 1.00000 | 0.15060 | 1.00000 | 1.00000 | 38 |
| mCherry | 0.15060 | 1.00000 | 0.00720 | 0.05960 | 107 |
| EGFP+mCherry_EGFP_Sig | 1.00000 | 0.00720 | 1.00000 | 0.93158 | 118 |
| EGFP+mCherry_mCherry_Sig | 1.00000 | 0.05960 | 0.93158 | 1.00000 | 119 |
| numSamples | 38 | 107 | 118 | 119 |
Diffrence between means
Slope Distribution (inf)
| EGFP | mCherry | EGFP+mCherry_EGFP_Sig | EGFP+mCherry_mCherry_Sig | numSamples | |
|---|---|---|---|---|---|
| EGFP | 0.00000 | 0.14665 | 0.10221 | 0.02285 | 38 |
| mCherry | 0.14665 | 0.00000 | 0.24886 | 0.16950 | 107 |
| EGFP+mCherry_EGFP_Sig | 0.10221 | 0.24886 | 0.00000 | 0.07936 | 118 |
| EGFP+mCherry_mCherry_Sig | 0.02285 | 0.16950 | 0.07936 | 0.00000 | 119 |
| numSamples | 38 | 107 | 118 | 119 |
effect size needed for Power = 0.95 and sig.level = 0.05
Slope Distribution (inf)
| EGFP | mCherry | EGFP+mCherry_EGFP_Sig | EGFP+mCherry_mCherry_Sig | numSamples | |
|---|---|---|---|---|---|
| EGFP | 6.078e-01 | 4.707e-01 | 4.270e-01 | 4.519e-01 | 38 |
| mCherry | 4.707e-01 | 3.199e-01 | 2.835e-01 | 3.023e-01 | 107 |
| EGFP+mCherry_EGFP_Sig | 4.270e-01 | 2.835e-01 | 2.452e-01 | 2.658e-01 | 118 |
| EGFP+mCherry_mCherry_Sig | 4.519e-01 | 3.023e-01 | 2.658e-01 | 2.848e-01 | 119 |
| numSamples | 38 | 107 | 118 | 119 |
Here are the figures side by side
Following is the violin graph representing the distribution of slopes
Midpoint
ttest. adjusted p values
Midpoint Distribution (inf + infLys)
| EGFP | mCherry | EGFP+mCherry_EGFP_Sig | EGFP+mCherry_mCherry_Sig | numSamples | |
|---|---|---|---|---|---|
| EGFP | 1.00000 | 0.00000 | 0.36648 | 0.00000 | 308 |
| mCherry | 0.00000 | 1.00000 | 0.00000 | 0.00000 | 268 |
| EGFP+mCherry_EGFP_Sig | 0.36648 | 0.00000 | 1.00000 | 0.00000 | 476 |
| EGFP+mCherry_mCherry_Sig | 0.00000 | 0.00000 | 0.00000 | 1.00000 | 364 |
| numSamples | 308 | 268 | 476 | 364 |
Mann-Whitney U Test, adjusted p values
Midpoint Distribution (inf + infLys)
| EGFP | mCherry | EGFP+mCherry_EGFP_Sig | EGFP+mCherry_mCherry_Sig | numSamples | |
|---|---|---|---|---|---|
| EGFP | 1.00000 | 0.00000 | 0.11110 | 0.00000 | 308 |
| mCherry | 0.00000 | 1.00000 | 0.00000 | 0.00000 | 268 |
| EGFP+mCherry_EGFP_Sig | 0.11110 | 0.00000 | 1.00000 | 0.00000 | 476 |
| EGFP+mCherry_mCherry_Sig | 0.00000 | 0.00000 | 0.00000 | 1.00000 | 364 |
| numSamples | 308 | 268 | 476 | 364 |
Diffrence between means
Midpoint Distribution (inf + infLys)
| EGFP | mCherry | EGFP+mCherry_EGFP_Sig | EGFP+mCherry_mCherry_Sig | numSamples | |
|---|---|---|---|---|---|
| EGFP | 0.00000 | 1.86200 | 0.18864 | 0.99361 | 308 |
| mCherry | 1.86200 | 0.00000 | 1.67336 | 0.86839 | 268 |
| EGFP+mCherry_EGFP_Sig | 0.18864 | 1.67336 | 0.00000 | 0.80498 | 476 |
| EGFP+mCherry_mCherry_Sig | 0.99361 | 0.86839 | 0.80498 | 0.00000 | 364 |
| numSamples | 308 | 268 | 476 | 364 |
effect size needed for Power = 0.95 and sig.level = 0.05
Midpoint Distribution (inf + infLys)
| EGFP | mCherry | EGFP+mCherry_EGFP_Sig | EGFP+mCherry_mCherry_Sig | numSamples | |
|---|---|---|---|---|---|
| EGFP | 6.240e-01 | 6.568e-01 | 5.512e-01 | 5.805e-01 | 308 |
| mCherry | 6.568e-01 | 6.895e-01 | 5.851e-01 | 6.136e-01 | 268 |
| EGFP+mCherry_EGFP_Sig | 5.512e-01 | 5.851e-01 | 4.749e-01 | 5.074e-01 | 476 |
| EGFP+mCherry_mCherry_Sig | 5.805e-01 | 6.136e-01 | 5.074e-01 | 5.373e-01 | 364 |
| numSamples | 308 | 268 | 476 | 364 |
ttest. adjusted p values
Midpoint Distribution (infLys)
| EGFP | mCherry | EGFP+mCherry_EGFP_Sig | EGFP+mCherry_mCherry_Sig | numSamples | |
|---|---|---|---|---|---|
| EGFP | 1.00000 | 0.00000 | 1.00000 | 0.00000 | 270 |
| mCherry | 0.00000 | 1.00000 | 0.00000 | 0.00048 | 161 |
| EGFP+mCherry_EGFP_Sig | 1.00000 | 0.00000 | 1.00000 | 0.00000 | 358 |
| EGFP+mCherry_mCherry_Sig | 0.00000 | 0.00048 | 0.00000 | 1.00000 | 245 |
| numSamples | 270 | 161 | 358 | 245 |
Mann-Whitney U Test, adjusted p values
Midpoint Distribution (infLys)
| EGFP | mCherry | EGFP+mCherry_EGFP_Sig | EGFP+mCherry_mCherry_Sig | numSamples | |
|---|---|---|---|---|---|
| EGFP | 1.00000 | 0.00000 | 0.73098 | 0.00000 | 270 |
| mCherry | 0.00000 | 1.00000 | 0.00000 | 0.00012 | 161 |
| EGFP+mCherry_EGFP_Sig | 0.73098 | 0.00000 | 1.00000 | 0.00000 | 358 |
| EGFP+mCherry_mCherry_Sig | 0.00000 | 0.00012 | 0.00000 | 1.00000 | 245 |
| numSamples | 270 | 161 | 358 | 245 |
Diffrence between means
Midpoint Distribution (infLys)
| EGFP | mCherry | EGFP+mCherry_EGFP_Sig | EGFP+mCherry_mCherry_Sig | numSamples | |
|---|---|---|---|---|---|
| EGFP | 0.00000 | 1.53436 | 0.07903 | 0.81516 | 270 |
| mCherry | 1.53436 | 0.00000 | 1.45533 | 0.71920 | 161 |
| EGFP+mCherry_EGFP_Sig | 0.07903 | 1.45533 | 0.00000 | 0.73614 | 358 |
| EGFP+mCherry_mCherry_Sig | 0.81516 | 0.71920 | 0.73614 | 0.00000 | 245 |
| numSamples | 270 | 161 | 358 | 245 |
effect size needed for Power = 0.95 and sig.level = 0.05
Midpoint Distribution (infLys)
| EGFP | mCherry | EGFP+mCherry_EGFP_Sig | EGFP+mCherry_mCherry_Sig | numSamples | |
|---|---|---|---|---|---|
| EGFP | 6.022e-01 | 7.059e-01 | 5.576e-01 | 5.939e-01 | 270 |
| mCherry | 7.059e-01 | 8.005e-01 | 6.652e-01 | 6.926e-01 | 161 |
| EGFP+mCherry_EGFP_Sig | 5.576e-01 | 6.652e-01 | 5.111e-01 | 5.513e-01 | 358 |
| EGFP+mCherry_mCherry_Sig | 5.939e-01 | 6.926e-01 | 5.513e-01 | 5.831e-01 | 245 |
| numSamples | 270 | 161 | 358 | 245 |
ttest. adjusted p values
Midpoint Distribution (inf)
| EGFP | mCherry | EGFP+mCherry_EGFP_Sig | EGFP+mCherry_mCherry_Sig | numSamples | |
|---|---|---|---|---|---|
| EGFP | 1.00000 | 0.01890 | 1.00000 | 0.43506 | 38 |
| mCherry | 0.01890 | 1.00000 | 0.00000 | 0.01605 | 107 |
| EGFP+mCherry_EGFP_Sig | 1.00000 | 0.00000 | 1.00000 | 0.04147 | 118 |
| EGFP+mCherry_mCherry_Sig | 0.43506 | 0.01605 | 0.04147 | 1.00000 | 119 |
| numSamples | 38 | 107 | 118 | 119 |
Mann-Whitney U Test, adjusted p values
Midpoint Distribution (inf)
| EGFP | mCherry | EGFP+mCherry_EGFP_Sig | EGFP+mCherry_mCherry_Sig | numSamples | |
|---|---|---|---|---|---|
| EGFP | 1.00000 | 0.00005 | 0.72332 | 0.01382 | 38 |
| mCherry | 0.00005 | 1.00000 | 0.00000 | 0.00643 | 107 |
| EGFP+mCherry_EGFP_Sig | 0.72332 | 0.00000 | 1.00000 | 0.01382 | 118 |
| EGFP+mCherry_mCherry_Sig | 0.01382 | 0.00643 | 0.01382 | 1.00000 | 119 |
| numSamples | 38 | 107 | 118 | 119 |
Diffrence between means
Midpoint Distribution (inf)
| EGFP | mCherry | EGFP+mCherry_EGFP_Sig | EGFP+mCherry_mCherry_Sig | numSamples | |
|---|---|---|---|---|---|
| EGFP | 0.00000 | 1.60599 | 0.02331 | 0.68612 | 38 |
| mCherry | 1.60599 | 0.00000 | 1.62929 | 0.91987 | 107 |
| EGFP+mCherry_EGFP_Sig | 0.02331 | 1.62929 | 0.00000 | 0.70942 | 118 |
| EGFP+mCherry_mCherry_Sig | 0.68612 | 0.91987 | 0.70942 | 0.00000 | 119 |
| numSamples | 38 | 107 | 118 | 119 |
effect size needed for Power = 0.95 and sig.level = 0.05
Midpoint Distribution (inf)
| EGFP | mCherry | EGFP+mCherry_EGFP_Sig | EGFP+mCherry_mCherry_Sig | numSamples | |
|---|---|---|---|---|---|
| EGFP | 2.625e+00 | 1.899e+00 | 1.845e+00 | 1.851e+00 | 38 |
| mCherry | 1.899e+00 | 1.165e+00 | 1.113e+00 | 1.117e+00 | 107 |
| EGFP+mCherry_EGFP_Sig | 1.845e+00 | 1.113e+00 | 1.060e+00 | 1.064e+00 | 118 |
| EGFP+mCherry_mCherry_Sig | 1.851e+00 | 1.117e+00 | 1.064e+00 | 1.068e+00 | 119 |
| numSamples | 38 | 107 | 118 | 119 |
Here are the figures side by side
Following is the violin graph representing the distribution of midpoints
Infection Time
ttest. adjusted p values
infection time Distribution (inf + infLys)
| EGFP | mCherry | EGFP+mCherry_EGFP_Sig | EGFP+mCherry_mCherry_Sig | numSamples | |
|---|---|---|---|---|---|
| EGFP | 1.00000 | 1.00000 | 0.03300 | 0.18525 | 308 |
| mCherry | 1.00000 | 1.00000 | 0.03300 | 0.18525 | 268 |
| EGFP+mCherry_EGFP_Sig | 0.03300 | 0.03300 | 1.00000 | 0.59356 | 476 |
| EGFP+mCherry_mCherry_Sig | 0.18525 | 0.18525 | 0.59356 | 1.00000 | 364 |
| numSamples | 308 | 268 | 476 | 364 |
Mann-Whitney U Test, adjusted p values
infection time Distribution (inf + infLys)
| EGFP | mCherry | EGFP+mCherry_EGFP_Sig | EGFP+mCherry_mCherry_Sig | numSamples | |
|---|---|---|---|---|---|
| EGFP | 1.00000 | 1.00000 | 0.00455 | 0.11522 | 308 |
| mCherry | 1.00000 | 1.00000 | 0.00455 | 0.11522 | 268 |
| EGFP+mCherry_EGFP_Sig | 0.00455 | 0.00455 | 1.00000 | 0.35196 | 476 |
| EGFP+mCherry_mCherry_Sig | 0.11522 | 0.11522 | 0.35196 | 1.00000 | 364 |
| numSamples | 308 | 268 | 476 | 364 |
Diffrence between means
infection time Distribution (inf + infLys)
| EGFP | mCherry | EGFP+mCherry_EGFP_Sig | EGFP+mCherry_mCherry_Sig | numSamples | |
|---|---|---|---|---|---|
| EGFP | 0.00000 | 0.01633 | 0.25381 | 0.16914 | 308 |
| mCherry | 0.01633 | 0.00000 | 0.27014 | 0.18547 | 268 |
| EGFP+mCherry_EGFP_Sig | 0.25381 | 0.27014 | 0.00000 | 0.08467 | 476 |
| EGFP+mCherry_mCherry_Sig | 0.16914 | 0.18547 | 0.08467 | 0.00000 | 364 |
| numSamples | 308 | 268 | 476 | 364 |
effect size needed for Power = 0.95 and sig.level = 0.05
infection time Distribution (inf + infLys)
| EGFP | mCherry | EGFP+mCherry_EGFP_Sig | EGFP+mCherry_mCherry_Sig | numSamples | |
|---|---|---|---|---|---|
| EGFP | 3.783e-01 | 3.980e-01 | 3.328e-01 | 3.392e-01 | 308 |
| mCherry | 3.980e-01 | 4.175e-01 | 3.530e-01 | 3.587e-01 | 268 |
| EGFP+mCherry_EGFP_Sig | 3.328e-01 | 3.530e-01 | 2.854e-01 | 2.944e-01 | 476 |
| EGFP+mCherry_mCherry_Sig | 3.392e-01 | 3.587e-01 | 2.944e-01 | 2.998e-01 | 364 |
| numSamples | 308 | 268 | 476 | 364 |
ttest. adjusted p values
infection time Distribution (infLys)
| EGFP | mCherry | EGFP+mCherry_EGFP_Sig | EGFP+mCherry_mCherry_Sig | numSamples | |
|---|---|---|---|---|---|
| EGFP | 1.00000 | 0.66946 | 0.03762 | 0.03473 | 270 |
| mCherry | 0.66946 | 1.00000 | 0.02890 | 0.02890 | 161 |
| EGFP+mCherry_EGFP_Sig | 0.03762 | 0.02890 | 1.00000 | 1.00000 | 358 |
| EGFP+mCherry_mCherry_Sig | 0.03473 | 0.02890 | 1.00000 | 1.00000 | 245 |
| numSamples | 270 | 161 | 358 | 245 |
Mann-Whitney U Test, adjusted p values
infection time Distribution (infLys)
| EGFP | mCherry | EGFP+mCherry_EGFP_Sig | EGFP+mCherry_mCherry_Sig | numSamples | |
|---|---|---|---|---|---|
| EGFP | 1.00000 | 1.00000 | 0.01220 | 0.00947 | 270 |
| mCherry | 1.00000 | 1.00000 | 0.00870 | 0.00650 | 161 |
| EGFP+mCherry_EGFP_Sig | 0.01220 | 0.00870 | 1.00000 | 1.00000 | 358 |
| EGFP+mCherry_mCherry_Sig | 0.00947 | 0.00650 | 1.00000 | 1.00000 | 245 |
| numSamples | 270 | 161 | 358 | 245 |
Diffrence between means
infection time Distribution (infLys)
| EGFP | mCherry | EGFP+mCherry_EGFP_Sig | EGFP+mCherry_mCherry_Sig | numSamples | |
|---|---|---|---|---|---|
| EGFP | 0.00000 | 0.13725 | 0.23744 | 0.26352 | 270 |
| mCherry | 0.13725 | 0.00000 | 0.37469 | 0.40077 | 161 |
| EGFP+mCherry_EGFP_Sig | 0.23744 | 0.37469 | 0.00000 | 0.02608 | 358 |
| EGFP+mCherry_mCherry_Sig | 0.26352 | 0.40077 | 0.02608 | 0.00000 | 245 |
| numSamples | 270 | 161 | 358 | 245 |
effect size needed for Power = 0.95 and sig.level = 0.05
infection time Distribution (infLys)
| EGFP | mCherry | EGFP+mCherry_EGFP_Sig | EGFP+mCherry_mCherry_Sig | numSamples | |
|---|---|---|---|---|---|
| EGFP | 3.881e-01 | 5.009e-01 | 3.496e-01 | 3.715e-01 | 270 |
| mCherry | 5.009e-01 | 6.136e-01 | 4.627e-01 | 4.834e-01 | 161 |
| EGFP+mCherry_EGFP_Sig | 3.496e-01 | 4.627e-01 | 3.107e-01 | 3.338e-01 | 358 |
| EGFP+mCherry_mCherry_Sig | 3.715e-01 | 4.834e-01 | 3.338e-01 | 3.514e-01 | 245 |
| numSamples | 270 | 161 | 358 | 245 |
ttest. adjusted p values
infection time Distribution (inf)
| EGFP | mCherry | EGFP+mCherry_EGFP_Sig | EGFP+mCherry_mCherry_Sig | numSamples | |
|---|---|---|---|---|---|
| EGFP | 1.00000 | 1.00000 | 1.00000 | 1.00000 | 38 |
| mCherry | 1.00000 | 1.00000 | 0.82627 | 0.82627 | 107 |
| EGFP+mCherry_EGFP_Sig | 1.00000 | 0.82627 | 1.00000 | 0.35800 | 118 |
| EGFP+mCherry_mCherry_Sig | 1.00000 | 0.82627 | 0.35800 | 1.00000 | 119 |
| numSamples | 38 | 107 | 118 | 119 |
Mann-Whitney U Test, adjusted p values
infection time Distribution (inf)
| EGFP | mCherry | EGFP+mCherry_EGFP_Sig | EGFP+mCherry_mCherry_Sig | numSamples | |
|---|---|---|---|---|---|
| EGFP | 1.00000 | 0.74910 | 0.95475 | 0.52633 | 38 |
| mCherry | 0.74910 | 1.00000 | 0.08050 | 0.74910 | 107 |
| EGFP+mCherry_EGFP_Sig | 0.95475 | 0.08050 | 1.00000 | 0.02240 | 118 |
| EGFP+mCherry_mCherry_Sig | 0.52633 | 0.74910 | 0.02240 | 1.00000 | 119 |
| numSamples | 38 | 107 | 118 | 119 |
Diffrence between means
infection time Distribution (inf)
| EGFP | mCherry | EGFP+mCherry_EGFP_Sig | EGFP+mCherry_mCherry_Sig | numSamples | |
|---|---|---|---|---|---|
| EGFP | 0.00000 | 0.00487 | 0.17954 | 0.17880 | 38 |
| mCherry | 0.00487 | 0.00000 | 0.18442 | 0.17393 | 107 |
| EGFP+mCherry_EGFP_Sig | 0.17954 | 0.18442 | 0.00000 | 0.35835 | 118 |
| EGFP+mCherry_mCherry_Sig | 0.17880 | 0.17393 | 0.35835 | 0.00000 | 119 |
| numSamples | 38 | 107 | 118 | 119 |
effect size needed for Power = 0.95 and sig.level = 0.05
infection time Distribution (inf)
| EGFP | mCherry | EGFP+mCherry_EGFP_Sig | EGFP+mCherry_mCherry_Sig | numSamples | |
|---|---|---|---|---|---|
| EGFP | 1.361e+00 | 9.145e-01 | 1.027e+00 | 9.650e-01 | 38 |
| mCherry | 9.145e-01 | 4.758e-01 | 5.814e-01 | 5.243e-01 | 107 |
| EGFP+mCherry_EGFP_Sig | 1.027e+00 | 5.814e-01 | 6.615e-01 | 6.140e-01 | 118 |
| EGFP+mCherry_mCherry_Sig | 9.650e-01 | 5.243e-01 | 6.140e-01 | 5.630e-01 | 119 |
| numSamples | 38 | 107 | 118 | 119 |
Here are the figures side by side
Following is the violin graph representing the distribution of infection time
Start point
ttest. adjusted p values
Start point (inf + infLys)
| EGFP | mCherry | EGFP+mCherry_EGFP_Sig | EGFP+mCherry_mCherry_Sig | numSamples | |
|---|---|---|---|---|---|
| EGFP | 1.00000 | 0.00000 | 0.06673 | 0.00000 | 308 |
| mCherry | 0.00000 | 1.00000 | 0.00000 | 0.00002 | 268 |
| EGFP+mCherry_EGFP_Sig | 0.06673 | 0.00000 | 1.00000 | 0.00000 | 476 |
| EGFP+mCherry_mCherry_Sig | 0.00000 | 0.00002 | 0.00000 | 1.00000 | 364 |
| numSamples | 308 | 268 | 476 | 364 |
Mann-Whitney U Test, adjusted p values
Start point (inf + infLys)
| EGFP | mCherry | EGFP+mCherry_EGFP_Sig | EGFP+mCherry_mCherry_Sig | numSamples | |
|---|---|---|---|---|---|
| EGFP | 1.00000 | 0.00000 | 0.01177 | 0.00000 | 308 |
| mCherry | 0.00000 | 1.00000 | 0.00000 | 0.00000 | 268 |
| EGFP+mCherry_EGFP_Sig | 0.01177 | 0.00000 | 1.00000 | 0.00000 | 476 |
| EGFP+mCherry_mCherry_Sig | 0.00000 | 0.00000 | 0.00000 | 1.00000 | 364 |
| numSamples | 308 | 268 | 476 | 364 |
Diffrence between means
Start point (inf + infLys)
| EGFP | mCherry | EGFP+mCherry_EGFP_Sig | EGFP+mCherry_mCherry_Sig | numSamples | |
|---|---|---|---|---|---|
| EGFP | 0.00000 | 1.85383 | 0.31554 | 1.07818 | 308 |
| mCherry | 1.85383 | 0.00000 | 1.53829 | 0.77565 | 268 |
| EGFP+mCherry_EGFP_Sig | 0.31554 | 1.53829 | 0.00000 | 0.76264 | 476 |
| EGFP+mCherry_mCherry_Sig | 1.07818 | 0.77565 | 0.76264 | 0.00000 | 364 |
| numSamples | 308 | 268 | 476 | 364 |
effect size needed for Power = 0.95 and sig.level = 0.05
Start point (inf + infLys)
| EGFP | mCherry | EGFP+mCherry_EGFP_Sig | EGFP+mCherry_mCherry_Sig | numSamples | |
|---|---|---|---|---|---|
| EGFP | 6.133e-01 | 6.474e-01 | 5.528e-01 | 5.718e-01 | 308 |
| mCherry | 6.474e-01 | 6.813e-01 | 5.880e-01 | 6.061e-01 | 268 |
| EGFP+mCherry_EGFP_Sig | 5.528e-01 | 5.880e-01 | 4.867e-01 | 5.107e-01 | 476 |
| EGFP+mCherry_mCherry_Sig | 5.718e-01 | 6.061e-01 | 5.107e-01 | 5.305e-01 | 364 |
| numSamples | 308 | 268 | 476 | 364 |
ttest. adjusted p values
start point Distribution (infLys)
| EGFP | mCherry | EGFP+mCherry_EGFP_Sig | EGFP+mCherry_mCherry_Sig | numSamples | |
|---|---|---|---|---|---|
| EGFP | 1.00000 | 0.00000 | 0.34357 | 0.00000 | 270 |
| mCherry | 0.00000 | 1.00000 | 0.00000 | 0.01206 | 161 |
| EGFP+mCherry_EGFP_Sig | 0.34357 | 0.00000 | 1.00000 | 0.00000 | 358 |
| EGFP+mCherry_mCherry_Sig | 0.00000 | 0.01206 | 0.00000 | 1.00000 | 245 |
| numSamples | 270 | 161 | 358 | 245 |
Mann-Whitney U Test, adjusted p values
start point Distribution (infLys)
| EGFP | mCherry | EGFP+mCherry_EGFP_Sig | EGFP+mCherry_mCherry_Sig | numSamples | |
|---|---|---|---|---|---|
| EGFP | 1.00000 | 0.00000 | 0.22190 | 0.00000 | 270 |
| mCherry | 0.00000 | 1.00000 | 0.00000 | 0.00508 | 161 |
| EGFP+mCherry_EGFP_Sig | 0.22190 | 0.00000 | 1.00000 | 0.00000 | 358 |
| EGFP+mCherry_mCherry_Sig | 0.00000 | 0.00508 | 0.00000 | 1.00000 | 245 |
| numSamples | 270 | 161 | 358 | 245 |
Diffrence between means
start point Distribution (infLys)
| EGFP | mCherry | EGFP+mCherry_EGFP_Sig | EGFP+mCherry_mCherry_Sig | numSamples | |
|---|---|---|---|---|---|
| EGFP | 0.00000 | 1.46574 | 0.19775 | 0.94693 | 270 |
| mCherry | 1.46574 | 0.00000 | 1.26799 | 0.51881 | 161 |
| EGFP+mCherry_EGFP_Sig | 0.19775 | 1.26799 | 0.00000 | 0.74918 | 358 |
| EGFP+mCherry_mCherry_Sig | 0.94693 | 0.51881 | 0.74918 | 0.00000 | 245 |
| numSamples | 270 | 161 | 358 | 245 |
effect size needed for Power = 0.95 and sig.level = 0.05
start point Distribution (infLys)
| EGFP | mCherry | EGFP+mCherry_EGFP_Sig | EGFP+mCherry_mCherry_Sig | numSamples | |
|---|---|---|---|---|---|
| EGFP | 5.959e-01 | 6.835e-01 | 5.651e-01 | 5.926e-01 | 270 |
| mCherry | 6.835e-01 | 7.587e-01 | 6.597e-01 | 6.751e-01 | 161 |
| EGFP+mCherry_EGFP_Sig | 5.651e-01 | 6.597e-01 | 5.305e-01 | 5.643e-01 | 358 |
| EGFP+mCherry_mCherry_Sig | 5.926e-01 | 6.751e-01 | 5.643e-01 | 5.873e-01 | 245 |
| numSamples | 270 | 161 | 358 | 245 |
ttest. adjusted p values
start point Distribution (inf)
| EGFP | mCherry | EGFP+mCherry_EGFP_Sig | EGFP+mCherry_mCherry_Sig | numSamples | |
|---|---|---|---|---|---|
| EGFP | 1.00000 | 0.01327 | 1.00000 | 0.51834 | 38 |
| mCherry | 0.01327 | 1.00000 | 0.00000 | 0.00565 | 107 |
| EGFP+mCherry_EGFP_Sig | 1.00000 | 0.00000 | 1.00000 | 0.16625 | 118 |
| EGFP+mCherry_mCherry_Sig | 0.51834 | 0.00565 | 0.16625 | 1.00000 | 119 |
| numSamples | 38 | 107 | 118 | 119 |
Mann-Whitney U Test, adjusted p values
start point Distribution (inf)
| EGFP | mCherry | EGFP+mCherry_EGFP_Sig | EGFP+mCherry_mCherry_Sig | numSamples | |
|---|---|---|---|---|---|
| EGFP | 1.00000 | 0.00005 | 0.47025 | 0.02413 | 38 |
| mCherry | 0.00005 | 1.00000 | 0.00000 | 0.00283 | 107 |
| EGFP+mCherry_EGFP_Sig | 0.47025 | 0.00000 | 1.00000 | 0.11748 | 118 |
| EGFP+mCherry_mCherry_Sig | 0.02413 | 0.00283 | 0.11748 | 1.00000 | 119 |
| numSamples | 38 | 107 | 118 | 119 |
Diffrence between means
start point Distribution (inf)
| EGFP | mCherry | EGFP+mCherry_EGFP_Sig | EGFP+mCherry_mCherry_Sig | numSamples | |
|---|---|---|---|---|---|
| EGFP | 0.00000 | 1.60355 | 0.06647 | 0.59672 | 38 |
| mCherry | 1.60355 | 0.00000 | 1.53709 | 1.00684 | 107 |
| EGFP+mCherry_EGFP_Sig | 0.06647 | 1.53709 | 0.00000 | 0.53025 | 118 |
| EGFP+mCherry_mCherry_Sig | 0.59672 | 1.00684 | 0.53025 | 0.00000 | 119 |
| numSamples | 38 | 107 | 118 | 119 |
effect size needed for Power = 0.95 and sig.level = 0.05
start point Distribution (inf)
| EGFP | mCherry | EGFP+mCherry_EGFP_Sig | EGFP+mCherry_mCherry_Sig | numSamples | |
|---|---|---|---|---|---|
| EGFP | 2.490e+00 | 1.839e+00 | 1.773e+00 | 1.770e+00 | 38 |
| mCherry | 1.839e+00 | 1.168e+00 | 1.106e+00 | 1.103e+00 | 107 |
| EGFP+mCherry_EGFP_Sig | 1.773e+00 | 1.106e+00 | 1.044e+00 | 1.041e+00 | 118 |
| EGFP+mCherry_mCherry_Sig | 1.770e+00 | 1.103e+00 | 1.041e+00 | 1.038e+00 | 119 |
| numSamples | 38 | 107 | 118 | 119 |
Here are the figures side by side
Following is the violin graph representing the distribution of start point
The Aim
This document includes double variable figures associated with samples. For all parameters we investigate either the entire set of infections (i.e both “infection” and “infection & lysis”), or we only investigate the “infection & lysis” cases. For each graph we plot density and point versions.
The investigated parameter couples are
1.) Midpoint vs Slope 2.) Slope vs Maximum 3.) Midpoint vs Maximum
Midpoint vs Slope
Slope vs Maximum
Midpoint vs Maximum
