Here is the association table of sample names and conditions, colored with respect to condition color used in figures.

File.names Conditions
SCV096 EGFP
SCV097 mCherry
SCV098 EGFP+mCherry_EGFP_Sig
SCV099 EGFP+mCherry_mCherry_Sig

The Aim of Distriburion Analysis

This part of document includes figures representing the distribution of labels associated with samples. Can give idea about percentage distributions of classes (like: “no signal”, “infection”, “infection&lysis”) and distribution of problematic samples (like: “dirt”, “dried out”, “multiple infections”)

Distibutions

Here once more the figures side by side

Distribution of DDOM

The Aim of Single Variable Analysis

This part of document includes single variable figures associated with samples. We focus on 5 parameters: maximum, shape, midpoint, infection time, start point. For all parameters we investigate either the entire set of infections (i.e both “infection” and “infection & lysis”), or we only investigate the “infection & lysis” cases.

For each figure we include tables showing p-values from t.test, Mann-Whitney U Test (wilcox.test), ,ean differences between conditions and the effect size. The tables also show the sample size for each condition.

Maximum

ttest. adjusted p values

Maximum Distribution (inf + infLys)

EGFP mCherry EGFP+mCherry_EGFP_Sig EGFP+mCherry_mCherry_Sig numSamples
EGFP 1.00000 0.00000 0.00930 1.00000 308
mCherry 0.00000 1.00000 0.00000 0.00000 268
EGFP+mCherry_EGFP_Sig 0.00930 0.00000 1.00000 0.00080 476
EGFP+mCherry_mCherry_Sig 1.00000 0.00000 0.00080 1.00000 364
numSamples 308 268 476 364

Mann-Whitney U Test, adjusted p values

Maximum Distribution (inf + infLys)

EGFP mCherry EGFP+mCherry_EGFP_Sig EGFP+mCherry_mCherry_Sig numSamples
EGFP 1.00000 0.00000 0.03602 0.58780 308
mCherry 0.00000 1.00000 0.00000 0.00000 268
EGFP+mCherry_EGFP_Sig 0.03602 0.00000 1.00000 0.00150 476
EGFP+mCherry_mCherry_Sig 0.58780 0.00000 0.00150 1.00000 364
numSamples 308 268 476 364

Diffrence between means

Maximum Distribution (inf + infLys)

EGFP mCherry EGFP+mCherry_EGFP_Sig EGFP+mCherry_mCherry_Sig numSamples
EGFP 0.00000 0.64865 0.27339 0.03281 308
mCherry 0.64865 0.00000 0.92204 0.61584 268
EGFP+mCherry_EGFP_Sig 0.27339 0.92204 0.00000 0.30620 476
EGFP+mCherry_mCherry_Sig 0.03281 0.61584 0.30620 0.00000 364
numSamples 308 268 476 364

effect size needed for Power = 0.95 and sig.level = 0.05

Maximum Distribution (inf + infLys)

EGFP mCherry EGFP+mCherry_EGFP_Sig EGFP+mCherry_mCherry_Sig numSamples
EGFP 4.176e-01 4.599e-01 3.380e-01 3.820e-01 308
mCherry 4.599e-01 5.020e-01 3.805e-01 4.245e-01 268
EGFP+mCherry_EGFP_Sig 3.380e-01 3.805e-01 2.584e-01 3.025e-01 476
EGFP+mCherry_mCherry_Sig 3.820e-01 4.245e-01 3.025e-01 3.465e-01 364
numSamples 308 268 476 364

ttest. adjusted p values

Maximum Distribution (infLys)

EGFP mCherry EGFP+mCherry_EGFP_Sig EGFP+mCherry_mCherry_Sig numSamples
EGFP 1.00000 0.00000 0.12122 1.00000 270
mCherry 0.00000 1.00000 0.00000 0.00000 161
EGFP+mCherry_EGFP_Sig 0.12122 0.00000 1.00000 0.04795 358
EGFP+mCherry_mCherry_Sig 1.00000 0.00000 0.04795 1.00000 245
numSamples 270 161 358 245

Mann-Whitney U Test, adjusted p values

Maximum Distribution (infLys)

EGFP mCherry EGFP+mCherry_EGFP_Sig EGFP+mCherry_mCherry_Sig numSamples
EGFP 1.00000 0.00000 0.27254 0.61955 270
mCherry 0.00000 1.00000 0.00000 0.00000 161
EGFP+mCherry_EGFP_Sig 0.27254 0.00000 1.00000 0.05355 358
EGFP+mCherry_mCherry_Sig 0.61955 0.00000 0.05355 1.00000 245
numSamples 270 161 358 245

Diffrence between means

Maximum Distribution (infLys)

EGFP mCherry EGFP+mCherry_EGFP_Sig EGFP+mCherry_mCherry_Sig numSamples
EGFP 0.00000 0.95878 0.20117 0.03984 270
mCherry 0.95878 0.00000 1.15995 0.91894 161
EGFP+mCherry_EGFP_Sig 0.20117 1.15995 0.00000 0.24101 358
EGFP+mCherry_mCherry_Sig 0.03984 0.91894 0.24101 0.00000 245
numSamples 270 161 358 245

effect size needed for Power = 0.95 and sig.level = 0.05

Maximum Distribution (infLys)

EGFP mCherry EGFP+mCherry_EGFP_Sig EGFP+mCherry_mCherry_Sig numSamples
EGFP 4.462e-01 5.872e-01 3.809e-01 4.337e-01 270
mCherry 5.872e-01 7.285e-01 5.216e-01 5.745e-01 161
EGFP+mCherry_EGFP_Sig 3.809e-01 5.216e-01 3.152e-01 3.672e-01 358
EGFP+mCherry_mCherry_Sig 4.337e-01 5.745e-01 3.672e-01 4.184e-01 245
numSamples 270 161 358 245

ttest. adjusted p values

Maximum Distribution (inf)

EGFP mCherry EGFP+mCherry_EGFP_Sig EGFP+mCherry_mCherry_Sig numSamples
EGFP 1.00000 0.31597 0.47338 0.60120 38
mCherry 0.31597 1.00000 0.00000 0.47338 107
EGFP+mCherry_EGFP_Sig 0.47338 0.00000 1.00000 0.00060 118
EGFP+mCherry_mCherry_Sig 0.60120 0.47338 0.00060 1.00000 119
numSamples 38 107 118 119

Mann-Whitney U Test, adjusted p values

Maximum Distribution (inf)

EGFP mCherry EGFP+mCherry_EGFP_Sig EGFP+mCherry_mCherry_Sig numSamples
EGFP 1.00000 0.00420 1.00000 0.23782 38
mCherry 0.00420 1.00000 0.00000 0.06087 107
EGFP+mCherry_EGFP_Sig 1.00000 0.00000 1.00000 0.00315 118
EGFP+mCherry_mCherry_Sig 0.23782 0.06087 0.00315 1.00000 119
numSamples 38 107 118 119

Diffrence between means

Maximum Distribution (inf)

EGFP mCherry EGFP+mCherry_EGFP_Sig EGFP+mCherry_mCherry_Sig numSamples
EGFP 0.00000 0.42643 0.31482 0.23858 38
mCherry 0.42643 0.00000 0.74125 0.18785 107
EGFP+mCherry_EGFP_Sig 0.31482 0.74125 0.00000 0.55340 118
EGFP+mCherry_mCherry_Sig 0.23858 0.18785 0.55340 0.00000 119
numSamples 38 107 118 119

effect size needed for Power = 0.95 and sig.level = 0.05

Maximum Distribution (inf)

EGFP mCherry EGFP+mCherry_EGFP_Sig EGFP+mCherry_mCherry_Sig numSamples
EGFP 1.183e+00 8.539e-01 7.741e-01 9.239e-01 38
mCherry 8.539e-01 5.222e-01 4.507e-01 5.766e-01 107
EGFP+mCherry_EGFP_Sig 7.741e-01 4.507e-01 3.729e-01 5.121e-01 118
EGFP+mCherry_mCherry_Sig 9.239e-01 5.766e-01 5.121e-01 6.199e-01 119
numSamples 38 107 118 119

Here are the figures side by side

Following is the violin graph representing the distribution of maximums

Slope

ttest. adjusted p values

Slope Distribution (inf + infLys)

EGFP mCherry EGFP+mCherry_EGFP_Sig EGFP+mCherry_mCherry_Sig numSamples
EGFP 1.00000 0.00005 0.56955 0.56955 308
mCherry 0.00005 1.00000 0.00000 0.00063 268
EGFP+mCherry_EGFP_Sig 0.56955 0.00000 1.00000 0.06907 476
EGFP+mCherry_mCherry_Sig 0.56955 0.00063 0.06907 1.00000 364
numSamples 308 268 476 364

Mann-Whitney U Test, adjusted p values

Slope Distribution (inf + infLys)

EGFP mCherry EGFP+mCherry_EGFP_Sig EGFP+mCherry_mCherry_Sig numSamples
EGFP 1.00000 0.00000 1.00000 0.14222 308
mCherry 0.00000 1.00000 0.00000 0.00050 268
EGFP+mCherry_EGFP_Sig 1.00000 0.00000 1.00000 0.06548 476
EGFP+mCherry_mCherry_Sig 0.14222 0.00050 0.06548 1.00000 364
numSamples 308 268 476 364

Diffrence between means

Slope Distribution (inf + infLys)

EGFP mCherry EGFP+mCherry_EGFP_Sig EGFP+mCherry_mCherry_Sig numSamples
EGFP 0.00000 0.26830 0.04440 0.05098 308
mCherry 0.26830 0.00000 0.31270 0.21732 268
EGFP+mCherry_EGFP_Sig 0.04440 0.31270 0.00000 0.09539 476
EGFP+mCherry_mCherry_Sig 0.05098 0.21732 0.09539 0.00000 364
numSamples 308 268 476 364

effect size needed for Power = 0.95 and sig.level = 0.05

Slope Distribution (inf + infLys)

EGFP mCherry EGFP+mCherry_EGFP_Sig EGFP+mCherry_mCherry_Sig numSamples
EGFP 1.955e-01 2.169e-01 1.659e-01 1.845e-01 308
mCherry 2.169e-01 2.382e-01 1.872e-01 2.059e-01 268
EGFP+mCherry_EGFP_Sig 1.659e-01 1.872e-01 1.362e-01 1.549e-01 476
EGFP+mCherry_mCherry_Sig 1.845e-01 2.059e-01 1.549e-01 1.736e-01 364
numSamples 308 268 476 364

ttest. adjusted p values

Slope Distribution (infLys)

EGFP mCherry EGFP+mCherry_EGFP_Sig EGFP+mCherry_mCherry_Sig numSamples
EGFP 1.00000 0.00000 1.00000 0.22814 270
mCherry 0.00000 1.00000 0.00000 0.00230 161
EGFP+mCherry_EGFP_Sig 1.00000 0.00000 1.00000 0.07650 358
EGFP+mCherry_mCherry_Sig 0.22814 0.00230 0.07650 1.00000 245
numSamples 270 161 358 245

Mann-Whitney U Test, adjusted p values

Slope Distribution (infLys)

EGFP mCherry EGFP+mCherry_EGFP_Sig EGFP+mCherry_mCherry_Sig numSamples
EGFP 1.00000 0.00000 1.00000 0.03804 270
mCherry 0.00000 1.00000 0.00000 0.00477 161
EGFP+mCherry_EGFP_Sig 1.00000 0.00000 1.00000 0.03804 358
EGFP+mCherry_mCherry_Sig 0.03804 0.00477 0.03804 1.00000 245
numSamples 270 161 358 245

Diffrence between means

Slope Distribution (infLys)

EGFP mCherry EGFP+mCherry_EGFP_Sig EGFP+mCherry_mCherry_Sig numSamples
EGFP 0.00000 0.35831 0.02204 0.09288 270
mCherry 0.35831 0.00000 0.38036 0.26543 161
EGFP+mCherry_EGFP_Sig 0.02204 0.38036 0.00000 0.11493 358
EGFP+mCherry_mCherry_Sig 0.09288 0.26543 0.11493 0.00000 245
numSamples 270 161 358 245

effect size needed for Power = 0.95 and sig.level = 0.05

Slope Distribution (infLys)

EGFP mCherry EGFP+mCherry_EGFP_Sig EGFP+mCherry_mCherry_Sig numSamples
EGFP 2.068e-01 2.689e-01 1.844e-01 2.119e-01 270
mCherry 2.689e-01 3.310e-01 2.465e-01 2.739e-01 161
EGFP+mCherry_EGFP_Sig 1.844e-01 2.465e-01 1.619e-01 1.896e-01 358
EGFP+mCherry_mCherry_Sig 2.119e-01 2.739e-01 1.896e-01 2.169e-01 245
numSamples 270 161 358 245

ttest. adjusted p values

Slope Distribution (inf)

EGFP mCherry EGFP+mCherry_EGFP_Sig EGFP+mCherry_mCherry_Sig numSamples
EGFP 1.00000 0.70190 0.84970 1.00000 38
mCherry 0.70190 1.00000 0.01810 0.21965 107
EGFP+mCherry_EGFP_Sig 0.84970 0.01810 1.00000 0.70190 118
EGFP+mCherry_mCherry_Sig 1.00000 0.21965 0.70190 1.00000 119
numSamples 38 107 118 119

Mann-Whitney U Test, adjusted p values

Slope Distribution (inf)

EGFP mCherry EGFP+mCherry_EGFP_Sig EGFP+mCherry_mCherry_Sig numSamples
EGFP 1.00000 0.15060 1.00000 1.00000 38
mCherry 0.15060 1.00000 0.00720 0.05960 107
EGFP+mCherry_EGFP_Sig 1.00000 0.00720 1.00000 0.93158 118
EGFP+mCherry_mCherry_Sig 1.00000 0.05960 0.93158 1.00000 119
numSamples 38 107 118 119

Diffrence between means

Slope Distribution (inf)

EGFP mCherry EGFP+mCherry_EGFP_Sig EGFP+mCherry_mCherry_Sig numSamples
EGFP 0.00000 0.14665 0.10221 0.02285 38
mCherry 0.14665 0.00000 0.24886 0.16950 107
EGFP+mCherry_EGFP_Sig 0.10221 0.24886 0.00000 0.07936 118
EGFP+mCherry_mCherry_Sig 0.02285 0.16950 0.07936 0.00000 119
numSamples 38 107 118 119

effect size needed for Power = 0.95 and sig.level = 0.05

Slope Distribution (inf)

EGFP mCherry EGFP+mCherry_EGFP_Sig EGFP+mCherry_mCherry_Sig numSamples
EGFP 6.078e-01 4.707e-01 4.270e-01 4.519e-01 38
mCherry 4.707e-01 3.199e-01 2.835e-01 3.023e-01 107
EGFP+mCherry_EGFP_Sig 4.270e-01 2.835e-01 2.452e-01 2.658e-01 118
EGFP+mCherry_mCherry_Sig 4.519e-01 3.023e-01 2.658e-01 2.848e-01 119
numSamples 38 107 118 119

Here are the figures side by side

Following is the violin graph representing the distribution of slopes

Midpoint

ttest. adjusted p values

Midpoint Distribution (inf + infLys)

EGFP mCherry EGFP+mCherry_EGFP_Sig EGFP+mCherry_mCherry_Sig numSamples
EGFP 1.00000 0.00000 0.36648 0.00000 308
mCherry 0.00000 1.00000 0.00000 0.00000 268
EGFP+mCherry_EGFP_Sig 0.36648 0.00000 1.00000 0.00000 476
EGFP+mCherry_mCherry_Sig 0.00000 0.00000 0.00000 1.00000 364
numSamples 308 268 476 364

Mann-Whitney U Test, adjusted p values

Midpoint Distribution (inf + infLys)

EGFP mCherry EGFP+mCherry_EGFP_Sig EGFP+mCherry_mCherry_Sig numSamples
EGFP 1.00000 0.00000 0.11110 0.00000 308
mCherry 0.00000 1.00000 0.00000 0.00000 268
EGFP+mCherry_EGFP_Sig 0.11110 0.00000 1.00000 0.00000 476
EGFP+mCherry_mCherry_Sig 0.00000 0.00000 0.00000 1.00000 364
numSamples 308 268 476 364

Diffrence between means

Midpoint Distribution (inf + infLys)

EGFP mCherry EGFP+mCherry_EGFP_Sig EGFP+mCherry_mCherry_Sig numSamples
EGFP 0.00000 1.86200 0.18864 0.99361 308
mCherry 1.86200 0.00000 1.67336 0.86839 268
EGFP+mCherry_EGFP_Sig 0.18864 1.67336 0.00000 0.80498 476
EGFP+mCherry_mCherry_Sig 0.99361 0.86839 0.80498 0.00000 364
numSamples 308 268 476 364

effect size needed for Power = 0.95 and sig.level = 0.05

Midpoint Distribution (inf + infLys)

EGFP mCherry EGFP+mCherry_EGFP_Sig EGFP+mCherry_mCherry_Sig numSamples
EGFP 6.240e-01 6.568e-01 5.512e-01 5.805e-01 308
mCherry 6.568e-01 6.895e-01 5.851e-01 6.136e-01 268
EGFP+mCherry_EGFP_Sig 5.512e-01 5.851e-01 4.749e-01 5.074e-01 476
EGFP+mCherry_mCherry_Sig 5.805e-01 6.136e-01 5.074e-01 5.373e-01 364
numSamples 308 268 476 364

ttest. adjusted p values

Midpoint Distribution (infLys)

EGFP mCherry EGFP+mCherry_EGFP_Sig EGFP+mCherry_mCherry_Sig numSamples
EGFP 1.00000 0.00000 1.00000 0.00000 270
mCherry 0.00000 1.00000 0.00000 0.00048 161
EGFP+mCherry_EGFP_Sig 1.00000 0.00000 1.00000 0.00000 358
EGFP+mCherry_mCherry_Sig 0.00000 0.00048 0.00000 1.00000 245
numSamples 270 161 358 245

Mann-Whitney U Test, adjusted p values

Midpoint Distribution (infLys)

EGFP mCherry EGFP+mCherry_EGFP_Sig EGFP+mCherry_mCherry_Sig numSamples
EGFP 1.00000 0.00000 0.73098 0.00000 270
mCherry 0.00000 1.00000 0.00000 0.00012 161
EGFP+mCherry_EGFP_Sig 0.73098 0.00000 1.00000 0.00000 358
EGFP+mCherry_mCherry_Sig 0.00000 0.00012 0.00000 1.00000 245
numSamples 270 161 358 245

Diffrence between means

Midpoint Distribution (infLys)

EGFP mCherry EGFP+mCherry_EGFP_Sig EGFP+mCherry_mCherry_Sig numSamples
EGFP 0.00000 1.53436 0.07903 0.81516 270
mCherry 1.53436 0.00000 1.45533 0.71920 161
EGFP+mCherry_EGFP_Sig 0.07903 1.45533 0.00000 0.73614 358
EGFP+mCherry_mCherry_Sig 0.81516 0.71920 0.73614 0.00000 245
numSamples 270 161 358 245

effect size needed for Power = 0.95 and sig.level = 0.05

Midpoint Distribution (infLys)

EGFP mCherry EGFP+mCherry_EGFP_Sig EGFP+mCherry_mCherry_Sig numSamples
EGFP 6.022e-01 7.059e-01 5.576e-01 5.939e-01 270
mCherry 7.059e-01 8.005e-01 6.652e-01 6.926e-01 161
EGFP+mCherry_EGFP_Sig 5.576e-01 6.652e-01 5.111e-01 5.513e-01 358
EGFP+mCherry_mCherry_Sig 5.939e-01 6.926e-01 5.513e-01 5.831e-01 245
numSamples 270 161 358 245

ttest. adjusted p values

Midpoint Distribution (inf)

EGFP mCherry EGFP+mCherry_EGFP_Sig EGFP+mCherry_mCherry_Sig numSamples
EGFP 1.00000 0.01890 1.00000 0.43506 38
mCherry 0.01890 1.00000 0.00000 0.01605 107
EGFP+mCherry_EGFP_Sig 1.00000 0.00000 1.00000 0.04147 118
EGFP+mCherry_mCherry_Sig 0.43506 0.01605 0.04147 1.00000 119
numSamples 38 107 118 119

Mann-Whitney U Test, adjusted p values

Midpoint Distribution (inf)

EGFP mCherry EGFP+mCherry_EGFP_Sig EGFP+mCherry_mCherry_Sig numSamples
EGFP 1.00000 0.00005 0.72332 0.01382 38
mCherry 0.00005 1.00000 0.00000 0.00643 107
EGFP+mCherry_EGFP_Sig 0.72332 0.00000 1.00000 0.01382 118
EGFP+mCherry_mCherry_Sig 0.01382 0.00643 0.01382 1.00000 119
numSamples 38 107 118 119

Diffrence between means

Midpoint Distribution (inf)

EGFP mCherry EGFP+mCherry_EGFP_Sig EGFP+mCherry_mCherry_Sig numSamples
EGFP 0.00000 1.60599 0.02331 0.68612 38
mCherry 1.60599 0.00000 1.62929 0.91987 107
EGFP+mCherry_EGFP_Sig 0.02331 1.62929 0.00000 0.70942 118
EGFP+mCherry_mCherry_Sig 0.68612 0.91987 0.70942 0.00000 119
numSamples 38 107 118 119

effect size needed for Power = 0.95 and sig.level = 0.05

Midpoint Distribution (inf)

EGFP mCherry EGFP+mCherry_EGFP_Sig EGFP+mCherry_mCherry_Sig numSamples
EGFP 2.625e+00 1.899e+00 1.845e+00 1.851e+00 38
mCherry 1.899e+00 1.165e+00 1.113e+00 1.117e+00 107
EGFP+mCherry_EGFP_Sig 1.845e+00 1.113e+00 1.060e+00 1.064e+00 118
EGFP+mCherry_mCherry_Sig 1.851e+00 1.117e+00 1.064e+00 1.068e+00 119
numSamples 38 107 118 119

Here are the figures side by side

Following is the violin graph representing the distribution of midpoints

Infection Time

ttest. adjusted p values

infection time Distribution (inf + infLys)

EGFP mCherry EGFP+mCherry_EGFP_Sig EGFP+mCherry_mCherry_Sig numSamples
EGFP 1.00000 1.00000 0.03300 0.18525 308
mCherry 1.00000 1.00000 0.03300 0.18525 268
EGFP+mCherry_EGFP_Sig 0.03300 0.03300 1.00000 0.59356 476
EGFP+mCherry_mCherry_Sig 0.18525 0.18525 0.59356 1.00000 364
numSamples 308 268 476 364

Mann-Whitney U Test, adjusted p values

infection time Distribution (inf + infLys)

EGFP mCherry EGFP+mCherry_EGFP_Sig EGFP+mCherry_mCherry_Sig numSamples
EGFP 1.00000 1.00000 0.00455 0.11522 308
mCherry 1.00000 1.00000 0.00455 0.11522 268
EGFP+mCherry_EGFP_Sig 0.00455 0.00455 1.00000 0.35196 476
EGFP+mCherry_mCherry_Sig 0.11522 0.11522 0.35196 1.00000 364
numSamples 308 268 476 364

Diffrence between means

infection time Distribution (inf + infLys)

EGFP mCherry EGFP+mCherry_EGFP_Sig EGFP+mCherry_mCherry_Sig numSamples
EGFP 0.00000 0.01633 0.25381 0.16914 308
mCherry 0.01633 0.00000 0.27014 0.18547 268
EGFP+mCherry_EGFP_Sig 0.25381 0.27014 0.00000 0.08467 476
EGFP+mCherry_mCherry_Sig 0.16914 0.18547 0.08467 0.00000 364
numSamples 308 268 476 364

effect size needed for Power = 0.95 and sig.level = 0.05

infection time Distribution (inf + infLys)

EGFP mCherry EGFP+mCherry_EGFP_Sig EGFP+mCherry_mCherry_Sig numSamples
EGFP 3.783e-01 3.980e-01 3.328e-01 3.392e-01 308
mCherry 3.980e-01 4.175e-01 3.530e-01 3.587e-01 268
EGFP+mCherry_EGFP_Sig 3.328e-01 3.530e-01 2.854e-01 2.944e-01 476
EGFP+mCherry_mCherry_Sig 3.392e-01 3.587e-01 2.944e-01 2.998e-01 364
numSamples 308 268 476 364

ttest. adjusted p values

infection time Distribution (infLys)

EGFP mCherry EGFP+mCherry_EGFP_Sig EGFP+mCherry_mCherry_Sig numSamples
EGFP 1.00000 0.66946 0.03762 0.03473 270
mCherry 0.66946 1.00000 0.02890 0.02890 161
EGFP+mCherry_EGFP_Sig 0.03762 0.02890 1.00000 1.00000 358
EGFP+mCherry_mCherry_Sig 0.03473 0.02890 1.00000 1.00000 245
numSamples 270 161 358 245

Mann-Whitney U Test, adjusted p values

infection time Distribution (infLys)

EGFP mCherry EGFP+mCherry_EGFP_Sig EGFP+mCherry_mCherry_Sig numSamples
EGFP 1.00000 1.00000 0.01220 0.00947 270
mCherry 1.00000 1.00000 0.00870 0.00650 161
EGFP+mCherry_EGFP_Sig 0.01220 0.00870 1.00000 1.00000 358
EGFP+mCherry_mCherry_Sig 0.00947 0.00650 1.00000 1.00000 245
numSamples 270 161 358 245

Diffrence between means

infection time Distribution (infLys)

EGFP mCherry EGFP+mCherry_EGFP_Sig EGFP+mCherry_mCherry_Sig numSamples
EGFP 0.00000 0.13725 0.23744 0.26352 270
mCherry 0.13725 0.00000 0.37469 0.40077 161
EGFP+mCherry_EGFP_Sig 0.23744 0.37469 0.00000 0.02608 358
EGFP+mCherry_mCherry_Sig 0.26352 0.40077 0.02608 0.00000 245
numSamples 270 161 358 245

effect size needed for Power = 0.95 and sig.level = 0.05

infection time Distribution (infLys)

EGFP mCherry EGFP+mCherry_EGFP_Sig EGFP+mCherry_mCherry_Sig numSamples
EGFP 3.881e-01 5.009e-01 3.496e-01 3.715e-01 270
mCherry 5.009e-01 6.136e-01 4.627e-01 4.834e-01 161
EGFP+mCherry_EGFP_Sig 3.496e-01 4.627e-01 3.107e-01 3.338e-01 358
EGFP+mCherry_mCherry_Sig 3.715e-01 4.834e-01 3.338e-01 3.514e-01 245
numSamples 270 161 358 245

ttest. adjusted p values

infection time Distribution (inf)

EGFP mCherry EGFP+mCherry_EGFP_Sig EGFP+mCherry_mCherry_Sig numSamples
EGFP 1.00000 1.00000 1.00000 1.00000 38
mCherry 1.00000 1.00000 0.82627 0.82627 107
EGFP+mCherry_EGFP_Sig 1.00000 0.82627 1.00000 0.35800 118
EGFP+mCherry_mCherry_Sig 1.00000 0.82627 0.35800 1.00000 119
numSamples 38 107 118 119

Mann-Whitney U Test, adjusted p values

infection time Distribution (inf)

EGFP mCherry EGFP+mCherry_EGFP_Sig EGFP+mCherry_mCherry_Sig numSamples
EGFP 1.00000 0.74910 0.95475 0.52633 38
mCherry 0.74910 1.00000 0.08050 0.74910 107
EGFP+mCherry_EGFP_Sig 0.95475 0.08050 1.00000 0.02240 118
EGFP+mCherry_mCherry_Sig 0.52633 0.74910 0.02240 1.00000 119
numSamples 38 107 118 119

Diffrence between means

infection time Distribution (inf)

EGFP mCherry EGFP+mCherry_EGFP_Sig EGFP+mCherry_mCherry_Sig numSamples
EGFP 0.00000 0.00487 0.17954 0.17880 38
mCherry 0.00487 0.00000 0.18442 0.17393 107
EGFP+mCherry_EGFP_Sig 0.17954 0.18442 0.00000 0.35835 118
EGFP+mCherry_mCherry_Sig 0.17880 0.17393 0.35835 0.00000 119
numSamples 38 107 118 119

effect size needed for Power = 0.95 and sig.level = 0.05

infection time Distribution (inf)

EGFP mCherry EGFP+mCherry_EGFP_Sig EGFP+mCherry_mCherry_Sig numSamples
EGFP 1.361e+00 9.145e-01 1.027e+00 9.650e-01 38
mCherry 9.145e-01 4.758e-01 5.814e-01 5.243e-01 107
EGFP+mCherry_EGFP_Sig 1.027e+00 5.814e-01 6.615e-01 6.140e-01 118
EGFP+mCherry_mCherry_Sig 9.650e-01 5.243e-01 6.140e-01 5.630e-01 119
numSamples 38 107 118 119

Here are the figures side by side

Following is the violin graph representing the distribution of infection time

Start point

ttest. adjusted p values

Start point (inf + infLys)

EGFP mCherry EGFP+mCherry_EGFP_Sig EGFP+mCherry_mCherry_Sig numSamples
EGFP 1.00000 0.00000 0.06673 0.00000 308
mCherry 0.00000 1.00000 0.00000 0.00002 268
EGFP+mCherry_EGFP_Sig 0.06673 0.00000 1.00000 0.00000 476
EGFP+mCherry_mCherry_Sig 0.00000 0.00002 0.00000 1.00000 364
numSamples 308 268 476 364

Mann-Whitney U Test, adjusted p values

Start point (inf + infLys)

EGFP mCherry EGFP+mCherry_EGFP_Sig EGFP+mCherry_mCherry_Sig numSamples
EGFP 1.00000 0.00000 0.01177 0.00000 308
mCherry 0.00000 1.00000 0.00000 0.00000 268
EGFP+mCherry_EGFP_Sig 0.01177 0.00000 1.00000 0.00000 476
EGFP+mCherry_mCherry_Sig 0.00000 0.00000 0.00000 1.00000 364
numSamples 308 268 476 364

Diffrence between means

Start point (inf + infLys)

EGFP mCherry EGFP+mCherry_EGFP_Sig EGFP+mCherry_mCherry_Sig numSamples
EGFP 0.00000 1.85383 0.31554 1.07818 308
mCherry 1.85383 0.00000 1.53829 0.77565 268
EGFP+mCherry_EGFP_Sig 0.31554 1.53829 0.00000 0.76264 476
EGFP+mCherry_mCherry_Sig 1.07818 0.77565 0.76264 0.00000 364
numSamples 308 268 476 364

effect size needed for Power = 0.95 and sig.level = 0.05

Start point (inf + infLys)

EGFP mCherry EGFP+mCherry_EGFP_Sig EGFP+mCherry_mCherry_Sig numSamples
EGFP 6.133e-01 6.474e-01 5.528e-01 5.718e-01 308
mCherry 6.474e-01 6.813e-01 5.880e-01 6.061e-01 268
EGFP+mCherry_EGFP_Sig 5.528e-01 5.880e-01 4.867e-01 5.107e-01 476
EGFP+mCherry_mCherry_Sig 5.718e-01 6.061e-01 5.107e-01 5.305e-01 364
numSamples 308 268 476 364

ttest. adjusted p values

start point Distribution (infLys)

EGFP mCherry EGFP+mCherry_EGFP_Sig EGFP+mCherry_mCherry_Sig numSamples
EGFP 1.00000 0.00000 0.34357 0.00000 270
mCherry 0.00000 1.00000 0.00000 0.01206 161
EGFP+mCherry_EGFP_Sig 0.34357 0.00000 1.00000 0.00000 358
EGFP+mCherry_mCherry_Sig 0.00000 0.01206 0.00000 1.00000 245
numSamples 270 161 358 245

Mann-Whitney U Test, adjusted p values

start point Distribution (infLys)

EGFP mCherry EGFP+mCherry_EGFP_Sig EGFP+mCherry_mCherry_Sig numSamples
EGFP 1.00000 0.00000 0.22190 0.00000 270
mCherry 0.00000 1.00000 0.00000 0.00508 161
EGFP+mCherry_EGFP_Sig 0.22190 0.00000 1.00000 0.00000 358
EGFP+mCherry_mCherry_Sig 0.00000 0.00508 0.00000 1.00000 245
numSamples 270 161 358 245

Diffrence between means

start point Distribution (infLys)

EGFP mCherry EGFP+mCherry_EGFP_Sig EGFP+mCherry_mCherry_Sig numSamples
EGFP 0.00000 1.46574 0.19775 0.94693 270
mCherry 1.46574 0.00000 1.26799 0.51881 161
EGFP+mCherry_EGFP_Sig 0.19775 1.26799 0.00000 0.74918 358
EGFP+mCherry_mCherry_Sig 0.94693 0.51881 0.74918 0.00000 245
numSamples 270 161 358 245

effect size needed for Power = 0.95 and sig.level = 0.05

start point Distribution (infLys)

EGFP mCherry EGFP+mCherry_EGFP_Sig EGFP+mCherry_mCherry_Sig numSamples
EGFP 5.959e-01 6.835e-01 5.651e-01 5.926e-01 270
mCherry 6.835e-01 7.587e-01 6.597e-01 6.751e-01 161
EGFP+mCherry_EGFP_Sig 5.651e-01 6.597e-01 5.305e-01 5.643e-01 358
EGFP+mCherry_mCherry_Sig 5.926e-01 6.751e-01 5.643e-01 5.873e-01 245
numSamples 270 161 358 245

ttest. adjusted p values

start point Distribution (inf)

EGFP mCherry EGFP+mCherry_EGFP_Sig EGFP+mCherry_mCherry_Sig numSamples
EGFP 1.00000 0.01327 1.00000 0.51834 38
mCherry 0.01327 1.00000 0.00000 0.00565 107
EGFP+mCherry_EGFP_Sig 1.00000 0.00000 1.00000 0.16625 118
EGFP+mCherry_mCherry_Sig 0.51834 0.00565 0.16625 1.00000 119
numSamples 38 107 118 119

Mann-Whitney U Test, adjusted p values

start point Distribution (inf)

EGFP mCherry EGFP+mCherry_EGFP_Sig EGFP+mCherry_mCherry_Sig numSamples
EGFP 1.00000 0.00005 0.47025 0.02413 38
mCherry 0.00005 1.00000 0.00000 0.00283 107
EGFP+mCherry_EGFP_Sig 0.47025 0.00000 1.00000 0.11748 118
EGFP+mCherry_mCherry_Sig 0.02413 0.00283 0.11748 1.00000 119
numSamples 38 107 118 119

Diffrence between means

start point Distribution (inf)

EGFP mCherry EGFP+mCherry_EGFP_Sig EGFP+mCherry_mCherry_Sig numSamples
EGFP 0.00000 1.60355 0.06647 0.59672 38
mCherry 1.60355 0.00000 1.53709 1.00684 107
EGFP+mCherry_EGFP_Sig 0.06647 1.53709 0.00000 0.53025 118
EGFP+mCherry_mCherry_Sig 0.59672 1.00684 0.53025 0.00000 119
numSamples 38 107 118 119

effect size needed for Power = 0.95 and sig.level = 0.05

start point Distribution (inf)

EGFP mCherry EGFP+mCherry_EGFP_Sig EGFP+mCherry_mCherry_Sig numSamples
EGFP 2.490e+00 1.839e+00 1.773e+00 1.770e+00 38
mCherry 1.839e+00 1.168e+00 1.106e+00 1.103e+00 107
EGFP+mCherry_EGFP_Sig 1.773e+00 1.106e+00 1.044e+00 1.041e+00 118
EGFP+mCherry_mCherry_Sig 1.770e+00 1.103e+00 1.041e+00 1.038e+00 119
numSamples 38 107 118 119

Here are the figures side by side

Following is the violin graph representing the distribution of start point

The Aim

This document includes double variable figures associated with samples. For all parameters we investigate either the entire set of infections (i.e both “infection” and “infection & lysis”), or we only investigate the “infection & lysis” cases. For each graph we plot density and point versions.

The investigated parameter couples are

1.) Midpoint vs Slope 2.) Slope vs Maximum 3.) Midpoint vs Maximum

Midpoint vs Slope

Slope vs Maximum

Midpoint vs Maximum